Consider a data-generation process that transforms low-dimensional _latent_ causally-related variables to high-dimensional _observed_ variables. Causal representation learning (CRL) is the process of using the observed data to recover the latent causal variables and the causal structure among them. Despite the multitude of identifiability results under various interventional CRL settings, the existing guarantees apply exclusively to the _infinite-sample_ regime (i.e., infinite observed samples). This paper establishes the first sample-complexity analysis for the finite-sample regime, in which the interactions between the number of observed samples and probabilistic guarantees on recovering the latent variables and structure are established. This paper focuses on _general_ latent causal models, stochastic _soft_ interventions, and a linear transformation from the latent to the observation space. The identifiability results ensure graph recovery up to ancestors and latent variables recovery up to mixing with parent variables. Specifically, ${\cal O}((\log \frac{1}{\delta})^{4})$ samples suffice for latent graph recovery up to ancestors with probability $1 - \delta$, and ${\cal O}((\frac{1}{\epsilon}\log \frac{1}{\delta})^{4})$ samples suffice for latent causal variables recovery that is $\epsilon$ close to the identifiability class with probability $1 - \delta$.

Massive data collection holds the promise of a better understanding of complex phenomena and, ultimately, better decisions. Representation learning has become a key driver of deep learning applications, as it allows learning latent spaces that capture important properties of the data without requiring any supervised annotations. Although representation learning has been hugely successful in predictive tasks, it can fail miserably in causal tasks including predicting the effect of a perturbation/intervention. This calls for a marriage between representation learning and causal inference. An exciting opportunity in this regard stems from the growing availability of multi-modal data (observational and perturbational, imaging-based and sequencing-based, at the single-cell level, tissue-level, and organism-level). We outline a statistical and computational framework for causal structure and representation learning motivated by fundamental biomedical questions: how to effectively use observational and perturbational data to perform causal discovery on observed causal variables; how to use multi-modal views of the system to learn causal variables; and how to design optimal perturbations.

Consider a data-generation process that transforms low-dimensional _latent_ causally-related variables to high-dimensional _observed_ variables. Causal representation learning (CRL) is the process of using the observed data to recover the latent causal variables and the causal structure among them. Despite the multitude of identifiability results under various interventional CRL settings, the existing guarantees apply exclusively to the _infinite-sample_ regime (i.e., infinite observed samples). This paper establishes the first sample-complexity analysis for the finite-sample regime, in which the interactions between the number of observed samples and probabilistic guarantees on recovering the latent variables and structure are established. This paper focuses on _general_ latent causal models, stochastic _soft_ interventions, and a linear transformation from the latent to the observation space.

Causal representation learning seeks to uncover latent, high-level causal representations from low-level observed data. It is particularly good at predictions under unseen distribution shifts, because these shifts can generally be interpreted as consequences of interventions. Hence leveraging {seen} distribution shifts becomes a natural strategy to help identifying causal representations, which in turn benefits predictions where distributions are previously {unseen}. Determining the types (or conditions) of such distribution shifts that do contribute to the identifiability of causal representations is critical. This work establishes a {sufficient} and {necessary} condition characterizing the types of distribution shifts for identifiability in the context of latent additive noise models. Furthermore, we present partial identifiability results when only a portion of distribution shifts meets the condition. In addition, we extend our findings to latent post-nonlinear causal models. We translate our findings into a practical algorithm, allowing for the acquisition of reliable latent causal representations. Our algorithm, guided by our underlying theory, has demonstrated outstanding performance across a diverse range of synthetic and real-world datasets. The empirical observations align closely with the theoretical findings, affirming the robustness and effectiveness of our approach.

Causal representation learning aims to unveil latent high-level causal representations from observed low-level data. One of its primary tasks is to provide reliable assurance of identifying these latent causal models, known as identifiability. A recent breakthrough explores identifiability by leveraging the change of causal influences among latent causal variables across multiple environments (Liu et al., 2022). However, this progress rests on the assumption that the causal relationships among latent causal variables adhere strictly to linear Gaussian models. In this paper, we extend the scope of latent causal models to involve nonlinear causal relationships, represented by polynomial models, and general noise distributions conforming to the exponential family. Additionally, we investigate the necessity of imposing changes on all causal parameters and present partial identifiability results when part of them remains unchanged. Further, we propose a novel empirical estimation method, grounded in our theoretical finding, that enables learning consistent latent causal representations. Our experimental results, obtained from both synthetic and real-world data, validate our theoretical contributions concerning identifiability and consistency. Causal representation learning, aiming to discover high-level latent causal variables and causal structures among them from unstructured observed data, provides a prospective way to compensate for drawbacks in traditional machine learning paradigms, e.g., the most fundamental limitations that data, driving and promoting the machine learning methods, needs to be independent and identically distributed (i.i.d.) (Sch olkopf, 2015). From the perspective of causal representations, the changes in data distribution, arising from various real-world data collection pipelines (Karahan et al., 2016; Frumkin, 2016; Pearl et al., 2016; Chandrasekaran et al., 2021), can be attributed to the changes of causal influences among causal variables (Sch olkopf et al., 2021). These changes are observable across a multitude of fields. For instance, these could appear in the analysis of imaging data of cells, where the contexts involve batches of cells exposed to various small-molecule compounds.

The task of causal representation learning aims to uncover latent higher-level causal representations that affect lower-level observations. Identifying true latent causal representations from observed data, while allowing instantaneous causal relations among latent variables, remains a challenge, however. To this end, we start from the analysis of three intrinsic properties in identifying latent space from observations: transitivity, permutation indeterminacy, and scaling indeterminacy. We find that transitivity acts as a key role in impeding the identifiability of latent causal representations. To address the unidentifiable issue due to transitivity, we introduce a novel identifiability condition where the underlying latent causal model satisfies a linear-Gaussian model, in which the causal coefficients and the distribution of Gaussian noise are modulated by an additional observed variable. Under some mild assumptions, we can show that the latent causal representations can be identified up to trivial permutation and scaling. Furthermore, based on this theoretical result, we propose a novel method, termed Structural caUsAl Variational autoEncoder, which directly learns latent causal representations and causal relationships among them, together with the mapping from the latent causal variables to the observed ones. We show that the proposed method learns the true parameters asymptotically. Experimental results on synthetic and real data demonstrate the identifiability and consistency results and the efficacy of the proposed method in learning latent causal representations.